diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelGenotyperWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelGenotyperWalker.java index 22f5a0494..83d91a3ab 100644 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelGenotyperWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelGenotyperWalker.java @@ -31,7 +31,7 @@ public class IndelGenotyperWalker extends ReadWalker { @Argument(fullName="outputFile", shortName="O", doc="output file name (defaults to BED format)", required=true) java.io.File bed_file; @Argument(fullName="1kg_format", shortName="1kg", doc="output in 1000 genomes format", required=false) - boolean FORMAT_1KG; + boolean FORMAT_1KG = false; @Argument(fullName="somatic", shortName="somatic", doc="Perform somatic calls; two input alignment files must be specified", required=false) boolean call_somatic = false;