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set default value for output format 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1434 348d0f76-0448-11de-a6fe-93d51630548a
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ebanks 2009-08-18 16:17:09 +00:00
parent 53153fcd79
commit 26a6f816c9
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelGenotyperWalker.java
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@ -31,7 +31,7 @@ public class IndelGenotyperWalker extends ReadWalker<Integer,Integer> {
@Argument(fullName="outputFile", shortName="O", doc="output file name (defaults to BED format)", required=true)
java.io.File bed_file;
@Argument(fullName="1kg_format", shortName="1kg", doc="output in 1000 genomes format", required=false)
boolean FORMAT_1KG;
boolean FORMAT_1KG = false;
@Argument(fullName="somatic", shortName="somatic",
doc="Perform somatic calls; two input alignment files must be specified", required=false)
boolean call_somatic = false;