diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java
index a5b0412e8..f3fd08cdd 100755
--- a/public/java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java
@@ -73,5 +73,53 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
                 Arrays.asList(params.cutVCFMD5));
         executeTest("testApplyRecalibration-"+params.inVCF, spec);
     }
+
+    VRTest indel = new VRTest("combined.phase1.chr20.raw.indels.sites.vcf",
+            "6d7ee4cb651c8b666e4a4523363caaff",  // tranches
+            "4759b111a5aa53975d46e0f22c7983bf",  // recal file
+            "5d7e07d8813db96ba3f3dfe4737f83d1"); // cut VCF
+
+    @DataProvider(name = "VRIndelTest")
+    public Object[][] createData2() {
+        return new Object[][]{ {indel} };
+    }
+
+    @Test(dataProvider = "VRIndelTest")
+    public void testVariantRecalibratorIndel(VRTest params) {
+        //System.out.printf("PARAMS FOR %s is %s%n", vcf, clusterFile);
+        WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
+                "-R " + b37KGReference +
+                        " -known:prior=10.0 " + GATKDataLocation + "dbsnp_132_b37.leftAligned.vcf" +
+                        " -training:prior=15.0 " + comparisonDataLocation + "Validated/Mills_Devine_Indels_2011/ALL.wgs.indels_mills_devine_hg19_leftAligned_collapsed_double_hit.sites.vcf" +
+                        " -truth:prior=15.0 " + comparisonDataLocation + "Validated/Mills_Devine_Indels_2011/ALL.wgs.indels_mills_devine_hg19_leftAligned_collapsed_double_hit.sites.vcf" +
+                        " -T VariantRecalibrator" +
+                        " -input " + params.inVCF +
+                        " -L 20:1,000,000-40,000,000" +
+                        " -an QD -an ReadPosRankSum -an HaplotypeScore" +
+                        " -percentBad 0.08" +
+                        " -mode INDEL -mG 3" +
+                        " --minNumBadVariants 0" +
+                        " --trustAllPolymorphic" + // for speed
+                        " -recalFile %s" +
+                        " -tranchesFile %s",
+                Arrays.asList(params.recalMD5, params.tranchesMD5));
+        executeTest("testVariantRecalibratorIndel-"+params.inVCF, spec).getFirst();
+    }
+
+    @Test(dataProvider = "VRIndelTest",dependsOnMethods="testVariantRecalibratorIndel")
+    public void testApplyRecalibrationIndel(VRTest params) {
+        WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
+                "-R " + b37KGReference +
+                        " -T ApplyRecalibration" +
+                        " -L 20:12,000,000-30,000,000" +
+                        " -mode INDEL" +
+                        " -NO_HEADER" +
+                        " -input " + params.inVCF +
+                        " -o %s" +
+                        " -tranchesFile " + MD5DB.getMD5FilePath(params.tranchesMD5, null) +
+                        " -recalFile " + MD5DB.getMD5FilePath(params.recalMD5, null),
+                Arrays.asList(params.cutVCFMD5));
+        executeTest("testApplyRecalibrationIndel-"+params.inVCF, spec);
+    }
 }