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Adding more walkers to the base GATK package. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1241 348d0f76-0448-11de-a6fe-93d51630548a
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hanna 2009-07-14 20:40:52 +00:00
parent efcbb16688
commit 25365ccb07
1 changed files with 6 additions and 0 deletions
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6
packages/GenomeAnalysisTK.xml
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@ -3,14 +3,20 @@
<name>GenomeAnalysisTK</name> <name>GenomeAnalysisTK</name>
<main-class>org.broadinstitute.sting.gatk.CommandLineGATK</main-class> <main-class>org.broadinstitute.sting.gatk.CommandLineGATK</main-class>
<dependencies> <dependencies>
<class>org.broadinstitute.sting.gatk.walkers.CountLociWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.CountReadsWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.DepthOfCoverageWalker</class> <class>org.broadinstitute.sting.gatk.walkers.DepthOfCoverageWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.PileupWalker</class> <class>org.broadinstitute.sting.gatk.walkers.PileupWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.PrintReadsWalker</class> <class>org.broadinstitute.sting.gatk.walkers.PrintReadsWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.ValidatingPileupWalker</class>
</dependencies> </dependencies>
<resources> <resources>
<file>java/src/org/broadinstitute/sting/gatk/walkers/CountReads.java</file>
<file>java/src/org/broadinstitute/sting/gatk/walkers/CountLoci.java</file>
<file>java/src/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageWalker.java</file> <file>java/src/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageWalker.java</file>
<file>java/src/org/broadinstitute/sting/gatk/walkers/PileupWalker.java</file> <file>java/src/org/broadinstitute/sting/gatk/walkers/PileupWalker.java</file>
<file>java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java</file> <file>java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java</file>
<file>java/src/org/broadinstitute/sting/gatk/walkers/ValidatingPileupWalker.java</file>
<file>java/src/org/broadinstitute/sting/gatk/examples/HelloWalker.java</file> <file>java/src/org/broadinstitute/sting/gatk/examples/HelloWalker.java</file>
<file>java/src/org/broadinstitute/sting/gatk/examples/build.xml</file> <file>java/src/org/broadinstitute/sting/gatk/examples/build.xml</file>
<file>testdata/exampleBAM.bam</file> <file>testdata/exampleBAM.bam</file>