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Oops. Commented out some tests to improve performance and then checked in the commented out tests. Reverted. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3012 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2010-03-16 16:34:50 +00:00
parent 59045ccb28
commit 2525ecaa43
1 changed files with 9 additions and 9 deletions
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18
java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java
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@ -14,7 +14,7 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
static HashMap<String, String> paramsFilesNoReadGroupTest = new HashMap<String, String>();
static HashMap<String, String> paramsFilesSolidIndels = new HashMap<String, String>();
//@Test
@Test
public void testCountCovariates1() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( validationDataLocation + "NA12892.SLX.SRP000031.2009_06.selected.bam", "e5b2d5a2f4283718dae678cbc84be847" );
@ -47,7 +47,7 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
}
}
//@Test
@Test
public void testTableRecalibrator1() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( validationDataLocation + "NA12892.SLX.SRP000031.2009_06.selected.bam", "6c59d291c37d053e0f188b762f3060a5" );
@ -78,7 +78,7 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
}
}
//@Test
@Test
public void testCountCovariatesUseOriginalQuals() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( validationDataLocation + "originalQuals.1kg.chr1.1-1K.bam", "26ae1bede4f337901b6194753f6cf914");
@ -132,7 +132,7 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
//@Test
@Test
public void testCountCovariatesSolidIndelsRemoveRefBias() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( validationDataLocation + "NA19240.chr1.BFAST.SOLID.bam", "3889abcc7f6fe420f546fc049bfc2b5a" );
@ -158,7 +158,7 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
}
}
//@Test
@Test
public void testTableRecalibratorSolidIndelsRemoveRefBias() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( validationDataLocation + "NA19240.chr1.BFAST.SOLID.bam", "a6eb2f8f531164b0a3cb19b4bb1d2f4f" );
@ -189,7 +189,7 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
//@Test
@Test
public void testCountCovariatesVCF() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SOLID.bam", "9b9d21ffb70f15ef2aebad21f3fc05cb");
@ -213,7 +213,7 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
}
}
//@Test
@Test
public void testCountCovariatesVCFPlusDBsnp() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SOLID.bam", "cc1cc9c1ff184d388d81574fdccc608e");
@ -241,7 +241,7 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
}
}
//@Test
@Test
public void testCountCovariatesNoReadGroups() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( validationDataLocation + "NA12762.SOLID.SRP000031.2009_07.chr1.10_20mb.bam", "a86c64f649b847b7f81ac50a808d3d45" );
@ -271,7 +271,7 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
}
}
//@Test
@Test
public void testTableRecalibratorNoReadGroups() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( validationDataLocation + "NA12762.SOLID.SRP000031.2009_07.chr1.10_20mb.bam", "474e05b5a0f13776daebeb964a5e0e2b" );