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no longer prints unnecessary table conversion failures that muck up emails. Run script now uses du not ls to display archive size 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4918 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2011-01-02 13:27:37 +00:00
parent 3fc9862964
commit 2448b859e4
2 changed files with 2 additions and 2 deletions
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2
python/analyzeRunReports.py
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@ -205,7 +205,7 @@ class RecordAsTable(StageHandler):
try: try:
print >> self.out, "\t".join([ oneField(field) for field in self.decoder.fields ]) print >> self.out, "\t".join([ oneField(field) for field in self.decoder.fields ])
except: except:
print 'Failed to convert to table ', parsed #print 'Failed to convert to table ', parsed
pass pass
addHandler('table', RecordAsTable) addHandler('table', RecordAsTable)

2
shell/runGATKReport.csh
View File

@ -26,7 +26,7 @@ python $GATK/python/analyzeRunReports.py summary $ARCHIVE.gz --max_days 1 --no-d
python $GATK/python/analyzeRunReports.py exceptions $ARCHIVE.gz --max_days 1 -E sting --no-dev python $GATK/python/analyzeRunReports.py exceptions $ARCHIVE.gz --max_days 1 -E sting --no-dev
echo "Archive directory contents" echo "Archive directory contents"
ls -ltrh $ARCHIVE_DIR du -sh $ARCHIVE_DIR
foreach maxDays ( 7 30 360 ) foreach maxDays ( 7 30 360 )
echo "Creating table" echo "Creating table"