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Give usage message if no arguments provided. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1483 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
andrewk 2009-08-31 00:28:43 +00:00
parent 813a4e838f
commit 2402dcd4c9
1 changed files with 3 additions and 0 deletions
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3
python/AlignBam.py
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@ -38,6 +38,9 @@ def run_paired_BWA(bam):
cmd("/seq/dirseq/samtools/current/samtools import "+bam_ref_list+" "+alignedsam+" "+alignedbam) cmd("/seq/dirseq/samtools/current/samtools import "+bam_ref_list+" "+alignedsam+" "+alignedbam)
if __name__ == "__main__": if __name__ == "__main__":
if len(sys.argv) < 2:
print "Usage: AlignBam.py BAM_FILE"
sys.exit()
bam = sys.argv[1] bam = sys.argv[1]
run_paired_BWA(bam) run_paired_BWA(bam)