From 23fac043d9c12d1441e37ee1bda27ad4e7d9c26c Mon Sep 17 00:00:00 2001 From: chartl Date: Fri, 15 Apr 2011 23:55:12 +0000 Subject: [PATCH] Fix the outputs so the proper files are gathered (not automatic due to multiplexer) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5654 348d0f76-0448-11de-a6fe-93d51630548a --- scala/qscript/oneoffs/chartl/ScatterGatherAssociation.q | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/scala/qscript/oneoffs/chartl/ScatterGatherAssociation.q b/scala/qscript/oneoffs/chartl/ScatterGatherAssociation.q index f4990d258..d015d9b1a 100755 --- a/scala/qscript/oneoffs/chartl/ScatterGatherAssociation.q +++ b/scala/qscript/oneoffs/chartl/ScatterGatherAssociation.q @@ -80,9 +80,12 @@ class ScatterGatherAssociation extends QScript { @Output(doc="sd") @Gather(classOf[SimpleTextGatherFunction]) var sd : File = new File(String.format("%s.%s.%s",base,"SampleDepth",ext)) - @Output(doc="rli") + @Output(doc="rai") @Gather(classOf[SimpleTextGatherFunction]) - var rli : File = new File(String.format("%s.%s.%s",base,"ReadsLargeInsertSize",ext)) + var rli : File = new File(String.format("%s.%s.%s",base,"ReadsAberrantInsertSize",ext)) + @Output(doc="rwi") + @Gather(classOf[SimpleTextGatherFunction]) + var rwi : File = new File(String.format("%s.%s.%s",base,"ReadsWithIndels",ext)) override def commandLine = { var bedStr : String = "" @@ -115,4 +118,4 @@ class ScatterGatherAssociation extends QScript { add(association) } -} \ No newline at end of file +}