diff --git a/scala/qscript/oneoffs/chartl/ScatterGatherAssociation.q b/scala/qscript/oneoffs/chartl/ScatterGatherAssociation.q index f4990d258..d015d9b1a 100755 --- a/scala/qscript/oneoffs/chartl/ScatterGatherAssociation.q +++ b/scala/qscript/oneoffs/chartl/ScatterGatherAssociation.q @@ -80,9 +80,12 @@ class ScatterGatherAssociation extends QScript { @Output(doc="sd") @Gather(classOf[SimpleTextGatherFunction]) var sd : File = new File(String.format("%s.%s.%s",base,"SampleDepth",ext)) - @Output(doc="rli") + @Output(doc="rai") @Gather(classOf[SimpleTextGatherFunction]) - var rli : File = new File(String.format("%s.%s.%s",base,"ReadsLargeInsertSize",ext)) + var rli : File = new File(String.format("%s.%s.%s",base,"ReadsAberrantInsertSize",ext)) + @Output(doc="rwi") + @Gather(classOf[SimpleTextGatherFunction]) + var rwi : File = new File(String.format("%s.%s.%s",base,"ReadsWithIndels",ext)) override def commandLine = { var bedStr : String = "" @@ -115,4 +118,4 @@ class ScatterGatherAssociation extends QScript { add(association) } -} \ No newline at end of file +}