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Fix the outputs so the proper files are gathered (not automatic due to multiplexer) 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5654 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
chartl 2011-04-15 23:55:12 +00:00
parent e5ef8388fc
commit 23fac043d9
1 changed files with 6 additions and 3 deletions
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9
scala/qscript/oneoffs/chartl/ScatterGatherAssociation.q
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@ -80,9 +80,12 @@ class ScatterGatherAssociation extends QScript {
@Output(doc="sd")
@Gather(classOf[SimpleTextGatherFunction])
var sd : File = new File(String.format("%s.%s.%s",base,"SampleDepth",ext))
@Output(doc="rli")
@Output(doc="rai")
@Gather(classOf[SimpleTextGatherFunction])
var rli : File = new File(String.format("%s.%s.%s",base,"ReadsLargeInsertSize",ext))
var rli : File = new File(String.format("%s.%s.%s",base,"ReadsAberrantInsertSize",ext))
@Output(doc="rwi")
@Gather(classOf[SimpleTextGatherFunction])
var rwi : File = new File(String.format("%s.%s.%s",base,"ReadsWithIndels",ext))
override def commandLine = {
var bedStr : String = ""
@ -115,4 +118,4 @@ class ScatterGatherAssociation extends QScript {
add(association)
}
}
}