Various updates to the knowledge base

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1. Updated NIST path to its proper place on the file system (and updated the NIST calls to the latest, v2.17).

2. Don't assess genotype concordance for multi-allelic sites because we mess up the GTs when we break
them into their component parts (and therefore the GTs look wrong when they really aren't).

3. Add an argument to control the minimum GQ for a GT to be considered called.
This improves genotyping accuracy assessments which were unfairly penalizing low confidence GT calls.
Delivers PT #59846158.

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Eric Banks 2013-11-04 10:37:08 -05:00

parent 0e3d83d1ef

commit 23c9c24adc

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