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Initial fingerprint boxplot for exome PreQC metrics. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6053 348d0f76-0448-11de-a6fe-93d51630548a
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droazen 2011-06-22 22:54:59 +00:00
parent ff6386c29b
commit 237f73c1b1
1 changed files with 10 additions and 0 deletions
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R/exomePreQC.R 100644
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data <- read.table('GoT2D_exomes_batch_005.tsv',header=T)
fingerprint_lods = list()
for(i in 1:nrow(data)) {
fingerprint_lods[[as.character(data$sample[i])]] <- eval(parse(text=data$FINGERPRINT_LODS[i]))
}
fingerprint_lod_order = order(unlist(lapply(fingerprint_lods,median),use.names=F))
boxplot(fingerprint_lods[fingerprint_lod_order],las=3,main='Fingerprint LOD Scores By Sample',xlab='Sample',ylab='LOD Score Distribution',cex.axis=0.65)