diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval2/VariantEval2Walker.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval2/VariantEval2Walker.java index 395201fae..5c4681368 100755 --- a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval2/VariantEval2Walker.java +++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval2/VariantEval2Walker.java @@ -493,7 +493,7 @@ public class VariantEval2Walker extends RodWalker { RefMetaDataTracker tracker, AlignmentContext context, boolean allowExcludes ) { for ( String name : names ) { Collection contexts = tracker.getVariantContexts(name, ALLOW_VARIANT_CONTEXT_TYPES, context.getLocation(), true, true); - if ( context.size() > 1 ) + if ( contexts.size() > 1 ) throw new StingException("Found multiple variant contexts at " + context.getLocation()); VariantContext vc = contexts.size() == 1 ? contexts.iterator().next() : null;