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Bugfix for pruneVariantContext, which was dropping the ref base for padding

This commit is contained in:
Mark DePristo 2011-11-17 15:32:52 -05:00
parent 473b860312
commit 23359d1c6c
1 changed files with 1 additions and 1 deletions
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2
public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContextUtils.java
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@ -302,7 +302,7 @@ public class VariantContextUtils {
}
return new VariantContext(vc.getSource(), vc.getID(), vc.getChr(), vc.getStart(), vc.getEnd(),
vc.getAlleles(), genotypes, vc.getNegLog10PError(), vc.getFilters(), attributes);
vc.getAlleles(), genotypes, vc.getNegLog10PError(), vc.getFilters(), attributes, vc.getReferenceBaseForIndel());
}
public enum GenotypeMergeType {