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No need to double overload the file constructor

This commit is contained in:
Mauricio Carneiro 2011-07-15 15:19:10 -04:00
parent 633b764877
commit 224d373997
1 changed files with 1 additions and 1 deletions
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public/scala/src/org/broadinstitute/sting/queue/util/QScriptUtils.scala
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@ -38,7 +38,7 @@ object QScriptUtils {
* Returns the number of contigs in the BAM file header. * Returns the number of contigs in the BAM file header.
*/ */
def getNumberOfContigs(bamFile: File): Int = { def getNumberOfContigs(bamFile: File): Int = {
val samReader = new SAMFileReader(new File(bamFile)) val samReader = new SAMFileReader(bamFile)
samReader.getFileHeader.getSequenceDictionary.getSequences.size() samReader.getFileHeader.getSequenceDictionary.getSequences.size()
} }