From 224d373997e0f4775207654ad4e246caad6c9aac Mon Sep 17 00:00:00 2001
From: Mauricio Carneiro <carneiro@broadinstitute.org>
Date: Fri, 15 Jul 2011 15:19:10 -0400
Subject: [PATCH] No need to double overload the file constructor

---
 .../src/org/broadinstitute/sting/queue/util/QScriptUtils.scala  | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/scala/src/org/broadinstitute/sting/queue/util/QScriptUtils.scala b/public/scala/src/org/broadinstitute/sting/queue/util/QScriptUtils.scala
index e2f1f1608..9fb4fa30d 100644
--- a/public/scala/src/org/broadinstitute/sting/queue/util/QScriptUtils.scala
+++ b/public/scala/src/org/broadinstitute/sting/queue/util/QScriptUtils.scala
@@ -38,7 +38,7 @@ object QScriptUtils {
    * Returns the number of contigs in the BAM file header.
    */
   def getNumberOfContigs(bamFile: File): Int = {
-    val samReader = new SAMFileReader(new File(bamFile))
+    val samReader = new SAMFileReader(bamFile)
     samReader.getFileHeader.getSequenceDictionary.getSequences.size()
   }