From 13905c00b39b01ea3783570028b6c3e624ea47ef Mon Sep 17 00:00:00 2001 From: Mauricio Carneiro Date: Fri, 9 Dec 2011 16:51:02 -0500 Subject: [PATCH] Updating PacbioProcessingPipeline to new Queue standards --- .../sting/queue/qscripts/PacbioProcessingPipeline.scala | 3 --- 1 file changed, 3 deletions(-) diff --git a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/PacbioProcessingPipeline.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/PacbioProcessingPipeline.scala index 6947d4398..6f5dae2f8 100755 --- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/PacbioProcessingPipeline.scala +++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/PacbioProcessingPipeline.scala @@ -21,9 +21,6 @@ class PacbioProcessingPipeline extends QScript { @Input(doc="input FASTA/FASTQ/BAM file - or list of FASTA/FASTQ/BAM files. ", shortName="i", required=true) var input: File = _ - @Input(doc="path to R resources folder inside the Sting repository", fullName="path_to_r", shortName="r", required=true) - var R: String = _ - @Input(doc="Reference fasta file", shortName="R", required=true) var reference: File = _