diff --git a/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala b/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala index 83e375b78..b0987339e 100644 --- a/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala +++ b/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala @@ -18,11 +18,11 @@ class FullCallingPipelineTest extends BaseTest { val dataset = newK1gDataset("Barcoded_1000G_WEx_chr20") dataset.pipeline.getProject.setIntervalList(new File(BaseTest.GATKDataLocation + "whole_exome_agilent_1.1_refseq_plus_3_boosters.Homo_sapiens_assembly19.targets.chr20.interval_list")) - dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.all.counter.nCalledLoci", 1363) - dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.known.counter.nCalledLoci", 1139) + dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.all.counter.nCalledLoci", 1352) + dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.known.counter.nCalledLoci", 1128) dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.novel.counter.nCalledLoci", 224) - dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.all.titv.tiTvRatio", 3.7000) - dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.known.titv.tiTvRatio", 3.7857) + dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.all.titv.tiTvRatio", 3.6621) + dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.known.titv.tiTvRatio", 3.7395) dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.novel.titv.tiTvRatio", 3.3077) dataset.jobQueue = "hour" @@ -34,12 +34,12 @@ class FullCallingPipelineTest extends BaseTest { val dataset = newK1gDataset("Barcoded_1000G_WEx") dataset.pipeline.getProject.setIntervalList(new File(BaseTest.GATKDataLocation + "whole_exome_agilent_1.1_refseq_plus_3_boosters.Homo_sapiens_assembly19.targets.interval_list")) - dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.all.counter.nCalledLoci", 51360) - dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.known.counter.nCalledLoci", 41203) - dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.novel.counter.nCalledLoci", 10157) - dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.all.titv.tiTvRatio", 3.2668) - dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.known.titv.tiTvRatio", 3.3376) - dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.novel.titv.tiTvRatio", 3.0020) + dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.all.counter.nCalledLoci", 50936) + dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.known.counter.nCalledLoci", 40956) + dataset.validations :+= new IntegerValidation("eval.dbsnp.all.called.novel.counter.nCalledLoci", 9980) + dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.all.titv.tiTvRatio", 3.2724) + dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.known.titv.tiTvRatio", 3.3349) + dataset.validations :+= new DoubleValidation("eval.dbsnp.all.called.novel.titv.tiTvRatio", 3.0340) dataset.jobQueue = "gsa" dataset.bigMemQueue = "gsa"