From 21369869b77b507e8f50c897199fd2689c796e72 Mon Sep 17 00:00:00 2001 From: hanna Date: Mon, 8 Feb 2010 03:29:55 +0000 Subject: [PATCH] Extend regex that supports every 'word' character to use any printable character except ':'. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2807 348d0f76-0448-11de-a6fe-93d51630548a --- java/src/org/broadinstitute/sting/utils/GenomeLocParser.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/utils/GenomeLocParser.java b/java/src/org/broadinstitute/sting/utils/GenomeLocParser.java index e32afee4d..9df8f8da1 100644 --- a/java/src/org/broadinstitute/sting/utils/GenomeLocParser.java +++ b/java/src/org/broadinstitute/sting/utils/GenomeLocParser.java @@ -54,7 +54,7 @@ import java.util.regex.Pattern; public class GenomeLocParser { private static Logger logger = Logger.getLogger(GenomeLocParser.class); - private static final Pattern mPattern = Pattern.compile("([\\w&&[^:]]+):*([\\d,]+)?([\\+-])?([\\d,]+)?$"); // matches case 3 + private static final Pattern mPattern = Pattern.compile("([\\p{Print}&&[^:]]+):*([\\d,]+)?([\\+-])?([\\d,]+)?$"); // matches case 3 // --------------------------------------------------------------------------------------------------------------