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Add extra logging to the GATK run report at the start of metrics aggregation. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4529 348d0f76-0448-11de-a6fe-93d51630548a
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hanna 2010-10-20 17:32:51 +00:00
parent a205900eff
commit 20fac43521
1 changed files with 2 additions and 0 deletions
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2
java/src/org/broadinstitute/sting/gatk/phonehome/GATKRunReport.java
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@ -172,6 +172,8 @@ public class GATKRunReport {
if ( type == PhoneHomeOption.NO_ET ) if ( type == PhoneHomeOption.NO_ET )
throw new ReviewedStingException("Trying to create a run report when type is NO_ET!"); throw new ReviewedStingException("Trying to create a run report when type is NO_ET!");
logger.info("Aggregating data for run report");
mGATKHeader = CommandLineGATK.createApplicationHeader(); mGATKHeader = CommandLineGATK.createApplicationHeader();
currentPath = System.getProperty("user.dir"); currentPath = System.getProperty("user.dir");