From 20fac435213dcf77b534627b0d5db60997dbfebf Mon Sep 17 00:00:00 2001 From: hanna Date: Wed, 20 Oct 2010 17:32:51 +0000 Subject: [PATCH] Add extra logging to the GATK run report at the start of metrics aggregation. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4529 348d0f76-0448-11de-a6fe-93d51630548a --- .../org/broadinstitute/sting/gatk/phonehome/GATKRunReport.java | 2 ++ 1 file changed, 2 insertions(+) diff --git a/java/src/org/broadinstitute/sting/gatk/phonehome/GATKRunReport.java b/java/src/org/broadinstitute/sting/gatk/phonehome/GATKRunReport.java index 1220a4039..24f5a75d6 100644 --- a/java/src/org/broadinstitute/sting/gatk/phonehome/GATKRunReport.java +++ b/java/src/org/broadinstitute/sting/gatk/phonehome/GATKRunReport.java @@ -172,6 +172,8 @@ public class GATKRunReport { if ( type == PhoneHomeOption.NO_ET ) throw new ReviewedStingException("Trying to create a run report when type is NO_ET!"); + logger.info("Aggregating data for run report"); + mGATKHeader = CommandLineGATK.createApplicationHeader(); currentPath = System.getProperty("user.dir");