Updating the checkType() function to include the new StructuralIndel variant type. Fixes outstanding broken integration test.

2012-08-22 07:33:10 -07:00 · 2012-08-22 07:33:10 -07:00 · 20601f034e
parent c7ce3e1cf5
commit 20601f034e
1 changed files with 1 additions and 0 deletions
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantDataManager.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantDataManager.java
@ -286,6 +286,7 @@ public class VariantDataManager {
            case INDEL:
            case MIXED:
            case SYMBOLIC:
+            case STRUCTURAL_INDEL:
                return checkVariationClass( evalVC, VariantRecalibratorArgumentCollection.Mode.INDEL );
            default:
                return false;