zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Remove "mem_free" from resident memory request params for Queue because it doesn't work and wouldn't actually reserve memory anyway

This commit is contained in:
Laura Gauthier 2016-01-08 10:27:56 -05:00
parent f002acebdf
commit 204cad3646
1 changed files with 2 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

3
protected/gatk-queue-extensions-distribution/src/test/scala/org/broadinstitute/gatk/queue/pipeline/examples/ExampleUnifiedGenotyperQueueTest.scala
View File

@ -109,7 +109,8 @@ class ExampleUnifiedGenotyperQueueTest {
}
@DataProvider(name="resMemReqParams")
def getResMemReqParam = Array(Array("mem_free"), Array("virtual_free")).asInstanceOf[Array[Array[Object]]]
//mem_free no longer works on GridEngine8 configuration; UGER will require "m_mem_free" instead of "virtual_free"
def getResMemReqParam = Array(Array("virtual_free")).asInstanceOf[Array[Array[Object]]]
@Test(dataProvider = "resMemReqParams", timeOut=36000000)
def testUnifiedGenotyperResMemReqParam(reqParam: String) {