From 1f93545c70d85364d7cd2382650ac1892c589a9a Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 28 May 2009 22:38:16 +0000
Subject: [PATCH] Always opt to merge dictionaries when creating a
 SAMFileHeaderMerger.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@852 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/dataSources/simpleDataSources/SAMDataSource.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SAMDataSource.java b/java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SAMDataSource.java
index 0f7b19743..84eb3e954 100755
--- a/java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SAMDataSource.java
+++ b/java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SAMDataSource.java
@@ -181,7 +181,7 @@ public class SAMDataSource implements SimpleDataSource {
      */
     private SamFileHeaderMerger createHeaderMerger() {
         List<SAMFileReader> lst = GetReaderList();
-        return new SamFileHeaderMerger(lst, SORT_ORDER);
+        return new SamFileHeaderMerger(lst, SORT_ORDER, true);
     }