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Added edu.mit.broad.picard to Queue packaged jar. 

Added hack to workaround EDU.oswego namespace and staging on mac case-insensitive filesystems.
This commit is contained in:
Khalid Shakir 2011-07-23 14:40:29 -04:00
parent dcf21f379a
commit 1f8fc4a041
2 changed files with 7 additions and 0 deletions
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6
build.xml
View File

@ -957,6 +957,12 @@
<!-- Unzip all classes from their current locations and assemble them in a staging directory --> <!-- Unzip all classes from their current locations and assemble them in a staging directory -->
<target name="stage" description="stage files for distribution"> <target name="stage" description="stage files for distribution">
<mkdir dir="staging"/> <mkdir dir="staging"/>
<!--
HACK: Create the edu directory before EDU on case-insensitive mac filesystems.
The ivy dependency colt -> concurrent contains an EDU.oswego package which
BCEL doesn't even pull in but messes up edu.mit.broad.
-->
<mkdir dir="staging/edu"/>
<unjar dest="staging" overwrite="false"> <unjar dest="staging" overwrite="false">
<fileset dir="${dist.dir}"> <fileset dir="${dist.dir}">
<patternset refid="dependency.mask" /> <patternset refid="dependency.mask" />

1
public/packages/Queue.xml
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@ -41,6 +41,7 @@
<!-- Picard --> <!-- Picard -->
<package name="net.sf.picard.**" /> <package name="net.sf.picard.**" />
<package name="edu.mit.broad.picard.**" />
<!-- JavaMail --> <!-- JavaMail -->
<package name="javax.activation.**" /> <package name="javax.activation.**" />