From 1f673e9faba7905bd05d125193afbb0286a4f636 Mon Sep 17 00:00:00 2001
From: chartl <chartl@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 23 Feb 2010 20:48:53 +0000
Subject: [PATCH] Float the bins with the given lower bound

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2878 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/oneoffprojects/walkers/CoverageStatistics.java      | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/CoverageStatistics.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/CoverageStatistics.java
index cd3d12e70..a53be48d5 100644
--- a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/CoverageStatistics.java
+++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/CoverageStatistics.java
@@ -243,13 +243,13 @@ class DepthOfCoverageStats {
         }
 
         int[] binLeftEndpoints = new int[bins+1];
-        binLeftEndpoints[0] = 0; // depth < start
+        binLeftEndpoints[0] = lower;
 
         int length = upper - lower;
         double scale = Math.log10((double) length)/bins;
 
         for ( int b = 1; b < bins ; b++ ) {
-            int leftEnd = (int) Math.floor(Math.pow(10.0,(b-1.0)*scale));
+            int leftEnd = lower + (int) Math.floor(Math.pow(10.0,(b-1.0)*scale));
 
             while ( leftEnd <= binLeftEndpoints[b-1] ) {
                 leftEnd++;