diff --git a/java/src/org/broadinstitute/sting/gatk/datasources/BAMFileStat.java b/java/src/org/broadinstitute/sting/gatk/datasources/BAMFileStat.java
index e7e2b65c6..90d9a5fad 100644
--- a/java/src/org/broadinstitute/sting/gatk/datasources/BAMFileStat.java
+++ b/java/src/org/broadinstitute/sting/gatk/datasources/BAMFileStat.java
@@ -80,6 +80,7 @@ public class BAMFileStat extends CommandLineProgram {
}
public void inspect(PrintStream outputStream, Integer startPosition, Integer stopPosition) {
+ /*
outputStream.printf("Number of reference sequences: %d%n", this.referenceToBins.size());
for(int referenceSequence: referenceToBins.keySet()) {
Bin[] bins = referenceToBins.get(referenceSequence);
@@ -97,6 +98,7 @@ public class BAMFileStat extends CommandLineProgram {
outputStream.printf("%d,",indexEntry);
outputStream.printf("%n");
}
+ */
}
}
}
diff --git a/settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-2.jar b/settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-3.jar
similarity index 91%
rename from settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-2.jar
rename to settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-3.jar
index 568416b9b..05ba590d3 100644
Binary files a/settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-2.jar and b/settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-3.jar differ
diff --git a/settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-2.xml b/settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-3.xml
similarity index 55%
rename from settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-2.xml
rename to settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-3.xml
index 7beba5fb1..1b36b12ab 100644
--- a/settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-2.xml
+++ b/settings/repository/edu.mit.broad/picard-private-parts-1333-sharding-3.xml
@@ -1,3 +1,3 @@
-
+
diff --git a/settings/repository/net.sf/picard-1.16.362-sharding.jar b/settings/repository/net.sf/picard-1.16.363-sharding.jar
similarity index 95%
rename from settings/repository/net.sf/picard-1.16.362-sharding.jar
rename to settings/repository/net.sf/picard-1.16.363-sharding.jar
index 8f28163ba..60f977b53 100644
Binary files a/settings/repository/net.sf/picard-1.16.362-sharding.jar and b/settings/repository/net.sf/picard-1.16.363-sharding.jar differ
diff --git a/settings/repository/net.sf/picard-1.16.362-sharding.xml b/settings/repository/net.sf/picard-1.16.363-sharding.xml
similarity index 76%
rename from settings/repository/net.sf/picard-1.16.362-sharding.xml
rename to settings/repository/net.sf/picard-1.16.363-sharding.xml
index 8605edce7..31c6ab92b 100644
--- a/settings/repository/net.sf/picard-1.16.362-sharding.xml
+++ b/settings/repository/net.sf/picard-1.16.363-sharding.xml
@@ -1,3 +1,3 @@
-
+
diff --git a/settings/repository/net.sf/sam-1.16.362-sharding.jar b/settings/repository/net.sf/sam-1.16.363-sharding.jar
similarity index 92%
rename from settings/repository/net.sf/sam-1.16.362-sharding.jar
rename to settings/repository/net.sf/sam-1.16.363-sharding.jar
index ef72fa9cf..3ebadb087 100644
Binary files a/settings/repository/net.sf/sam-1.16.362-sharding.jar and b/settings/repository/net.sf/sam-1.16.363-sharding.jar differ
diff --git a/settings/repository/net.sf/sam-1.16.362-sharding.xml b/settings/repository/net.sf/sam-1.16.363-sharding.xml
similarity index 52%
rename from settings/repository/net.sf/sam-1.16.362-sharding.xml
rename to settings/repository/net.sf/sam-1.16.363-sharding.xml
index 7692bcd7d..cc08fdd9e 100644
--- a/settings/repository/net.sf/sam-1.16.362-sharding.xml
+++ b/settings/repository/net.sf/sam-1.16.363-sharding.xml
@@ -1,3 +1,3 @@
-
+