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Base Recalibrator doesn't recalibrate all reads, so the final output line was confusing

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Eric Banks 2013-05-07 11:59:18 -04:00
parent 7252238271
commit 1f3624d204
1 changed files with 1 additions and 1 deletions
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protected/java/src/org/broadinstitute/sting/gatk/walkers/bqsr/BaseRecalibrator.java
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@ -519,7 +519,7 @@ public class BaseRecalibrator extends ReadWalker<Long, Long> implements NanoSche
generatePlots(); generatePlots();
} }
logger.info("Processed: " + result + " reads"); logger.info("BaseRecalibrator was able to recalibrate " + result + " reads");
} }
private RecalibrationTables getRecalibrationTable() { private RecalibrationTables getRecalibrationTable() {