zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Better debugging output with .debug 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@433 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2009-04-15 19:09:18 +00:00
parent 9cc808104e
commit 1edfe48194
1 changed files with 1 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

1
java/src/org/broadinstitute/sting/gatk/traversals/TraverseByLoci.java
View File

@ -111,6 +111,7 @@ public class TraverseByLoci extends TraversalEngine {
// actually get the read and hand it to the walker // actually get the read and hand it to the walker
LocusContext locus = iter.next(); LocusContext locus = iter.next();
logger.debug(String.format("Crossing locus %s with %d reads", locus.getLocation(), locus.numReads()));
if ( DOWNSAMPLE_BY_COVERAGE ) if ( DOWNSAMPLE_BY_COVERAGE )
locus.downsampleToCoverage(downsamplingCoverage); locus.downsampleToCoverage(downsamplingCoverage);