From 1e682deb26aad12d4421cf9ff7f08318c1cd4ab3 Mon Sep 17 00:00:00 2001 From: David Roazen Date: Thu, 15 Sep 2011 13:07:50 -0400 Subject: [PATCH] Minor html-formatting-related documentation fix to the SnpEff class. --- .../org/broadinstitute/sting/gatk/walkers/annotator/SnpEff.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/SnpEff.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/SnpEff.java index 14abbca5b..bb3685fb5 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/SnpEff.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/SnpEff.java @@ -45,7 +45,7 @@ import java.util.*; * (http://snpeff.sourceforge.net/). * * For each variant, chooses one of the effects of highest biological impact from the SnpEff - * output file (which must be provided on the command line via --snpEffFile .vcf), + * output file (which must be provided on the command line via --snpEffFile filename.vcf), * and adds annotations on that effect. * * @author David Roazen