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Bringing up to speed with new syntax

This commit is contained in:
Eric Banks 2011-08-09 09:26:06 -04:00
parent 70b3daf689
commit 1e490e0dec
1 changed files with 3 additions and 3 deletions
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6
public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java
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@ -15,7 +15,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest {
" -glm BOTH" +
" -I " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.bam" +
" -L chr1:1-50,000,000" +
" -B:dbsnp,VCF " + b36dbSNP129 +
" -dbsnp,VCF " + b36dbSNP129 +
" -o /dev/null",
0,
new ArrayList<String>(0));
@ -30,7 +30,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest {
" -glm BOTH" +
" -I " + evaluationDataLocation + "NA12878.ESP.WEx.chr1.bam" +
" -L " + evaluationDataLocation + "whole_exome_agilent_designed_120.targets.chr1.interval_list" +
" -B:dbsnp,vcf " + b36dbSNP129 +
" -dbsnp,vcf " + b36dbSNP129 +
" -o /dev/null",
0,
new ArrayList<String>(0));
@ -46,7 +46,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest {
" -glm BOTH" +
" -L chr1:1-50,000,000" +
" -nt 10" +
" -B:dbsnp,vcf " + b36dbSNP129 +
" -dbsnp,vcf " + b36dbSNP129 +
" -o /dev/null",
0,
new ArrayList<String>(0));