From 1e193e4c20c8386191cd84c7dc495b27f934a3b9 Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 26 Aug 2010 16:29:42 +0000
Subject: [PATCH] prinring '\n' at the end of line leads to some aesthetical
 advantages

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4129 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/walkers/indels/IndelGenotyperV2Walker.java       | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java
index 926bf24bd..64bbe38c4 100644
--- a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java
@@ -495,6 +495,7 @@ public class IndelGenotyperV2Walker extends ReadWalker<Integer,Integer> {
                         fullRecord.append(annotationString);
                         try {
                             verboseWriter.write(fullRecord.toString());
+                            verboseWriter.write('\n');
                         } catch (IOException e) {
                             throw new StingException("Write failed (verbose writer). "+e.getMessage());
                         }
@@ -654,6 +655,7 @@ public class IndelGenotyperV2Walker extends ReadWalker<Integer,Integer> {
                     }
                     try {
                         verboseWriter.write(fullRecord + "\t"+ annotationString);
+                        verboseWriter.write('\n');
                     } catch (IOException e) {
                         throw new StingException("Write failed (verbose writer). "+e.getMessage());
                     }