diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java index 926bf24bd..64bbe38c4 100644 --- a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java @@ -495,6 +495,7 @@ public class IndelGenotyperV2Walker extends ReadWalker { fullRecord.append(annotationString); try { verboseWriter.write(fullRecord.toString()); + verboseWriter.write('\n'); } catch (IOException e) { throw new StingException("Write failed (verbose writer). "+e.getMessage()); } @@ -654,6 +655,7 @@ public class IndelGenotyperV2Walker extends ReadWalker { } try { verboseWriter.write(fullRecord + "\t"+ annotationString); + verboseWriter.write('\n'); } catch (IOException e) { throw new StingException("Write failed (verbose writer). "+e.getMessage()); }