diff --git a/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractIntervals.scala b/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractIntervals.scala
index a7b324a2b..03d31a217 100755
--- a/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractIntervals.scala
+++ b/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractIntervals.scala
@@ -42,6 +42,7 @@ class VCFExtractIntervals(inVCF: File, outList: File, useFilterSites: Boolean) e
         }
       }
     }
+    out.printf("%s%n",prev)
     out.printf("%s%n",cur)
 
     out.close