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hostname now fully qualified and working 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4163 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2010-08-29 17:04:37 +00:00
parent 9556004dbb
commit 1ddb5d17c9
1 changed files with 12 additions and 7 deletions
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19
java/src/org/broadinstitute/sting/gatk/phonehome/GATKRunReport.java
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@ -167,28 +167,33 @@ public class GATKRunReport {
* @param engine the GAE we used to run the walker, so we can fetch runtime, args, etc * @param engine the GAE we used to run the walker, so we can fetch runtime, args, etc
*/ */
public GATKRunReport(Walker<?,?> walker, Exception e, GenomeAnalysisEngine engine) { public GATKRunReport(Walker<?,?> walker, Exception e, GenomeAnalysisEngine engine) {
// what did we run?
cmdLine = CommandLineUtils.createApproximateCommandLineArgumentString(engine, walker);
this.mCollection = engine.getArguments(); this.mCollection = engine.getArguments();
this.mException = e == null ? null : new ExceptionToXML(e); walkerName = engine.getWalkerName(walker.getClass());
svnVersion = CommandLineGATK.getVersionNumber();
// runtime performance metrics
startTime = dateFormat.format(engine.getStartTime()); startTime = dateFormat.format(engine.getStartTime());
Date end = new java.util.Date(); Date end = new java.util.Date();
endTime = dateFormat.format(end); endTime = dateFormat.format(end);
runTime = (end.getTime() - engine.getStartTime().getTime()) / 1000L; // difference in seconds runTime = (end.getTime() - engine.getStartTime().getTime()) / 1000L; // difference in seconds
cmdLine = CommandLineUtils.createApproximateCommandLineArgumentString(engine, walker);
walkerName = engine.getWalkerName(walker.getClass());
svnVersion = CommandLineGATK.getVersionNumber();
nIterations = engine.getCumulativeMetrics().getNumIterations(); nIterations = engine.getCumulativeMetrics().getNumIterations();
nReads = engine.getCumulativeMetrics().getNumReadsSeen(); nReads = engine.getCumulativeMetrics().getNumReadsSeen();
readMetrics = engine.getCumulativeMetrics().toString(); readMetrics = engine.getCumulativeMetrics().toString();
memory = Runtime.getRuntime().totalMemory(); memory = Runtime.getRuntime().totalMemory();
tmpDir = System.getProperty("java.io.tmpdir"); tmpDir = System.getProperty("java.io.tmpdir");
// user and hostname -- information about the runner of the GATK
userName = System.getProperty("user.name"); userName = System.getProperty("user.name");
hostName = resolveHostname();
// basic java information
java = Utils.join("-", Arrays.asList(System.getProperty("java.vendor"), System.getProperty("java.version"))); java = Utils.join("-", Arrays.asList(System.getProperty("java.vendor"), System.getProperty("java.version")));
machine = Utils.join("-", Arrays.asList(System.getProperty("os.name"), System.getProperty("os.arch"))); machine = Utils.join("-", Arrays.asList(System.getProperty("os.name"), System.getProperty("os.arch")));
resolveHostname(); // if there was an exception, capture it
this.mException = e == null ? null : new ExceptionToXML(e);
} }
/** /**
@ -199,7 +204,7 @@ public class GATKRunReport {
*/ */
private String resolveHostname() { private String resolveHostname() {
try { try {
return InetAddress.getLocalHost().getHostName(); return InetAddress.getLocalHost().getCanonicalHostName();
} }
catch (java.net.UnknownHostException uhe) { // [beware typo in code sample -dmw] catch (java.net.UnknownHostException uhe) { // [beware typo in code sample -dmw]
return "unresolvable"; return "unresolvable";