diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/utils/helpers/DbSNPHelper.java b/java/src/org/broadinstitute/sting/gatk/refdata/utils/helpers/DbSNPHelper.java index cc9374c0b..fec625b40 100644 --- a/java/src/org/broadinstitute/sting/gatk/refdata/utils/helpers/DbSNPHelper.java +++ b/java/src/org/broadinstitute/sting/gatk/refdata/utils/helpers/DbSNPHelper.java @@ -50,6 +50,10 @@ public class DbSNPHelper { return feature.getVariantType().contains("single") && feature.getLocationType().contains("exact"); } + public static boolean isMNP(DbSNPFeature feature) { + return feature.getVariantType().contains("mnp") && feature.getLocationType().contains("range"); + } + public static String toMediumString(DbSNPFeature feature) { String s = String.format("%s:%d:%s:%s", feature.getChr(), feature.getStart(), feature.getRsID(), Utils.join("",feature.getObserved())); if (isSNP(feature)) s += ":SNP";