Interval-based traversals were bleeding file handles. Fixed.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@541 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-26 18:35:54 +00:00 · 2009-04-26 18:35:54 +00:00 · 1daa011387
parent 1e2e78265d
commit 1daa011387
1 changed files with 3 additions and 0 deletions
--- a/java/src/org/broadinstitute/sting/gatk/traversals/TraverseByLoci.java
+++ b/java/src/org/broadinstitute/sting/gatk/traversals/TraverseByLoci.java
@ -95,6 +95,9 @@ public class TraverseByLoci extends TraversalEngine {

        //printOnTraversalDone("loci", sum);
        walker.onTraversalDone(sum);
+
+        samReader.close();
+
        return sum;
    }