diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java index 1e9716fc5..ba9b5c4df 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java @@ -2,6 +2,8 @@ package org.broadinstitute.sting.playground.gatk.walkers; import org.broadinstitute.sting.gatk.LocusContext; import org.broadinstitute.sting.gatk.walkers.LocusWalker; +import org.broadinstitute.sting.gatk.walkers.By; +import org.broadinstitute.sting.gatk.walkers.DataSource; import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker; import org.broadinstitute.sting.utils.cmdLine.Argument; import org.broadinstitute.sting.utils.Pair; @@ -18,6 +20,7 @@ import net.sf.picard.reference.ReferenceSequence; import edu.mit.broad.picard.util.Interval; import edu.mit.broad.picard.util.OverlapDetector; +@By(DataSource.REFERENCE) public class HybSelPerformanceWalker extends LocusWalker { @Argument(fullName="min_mapq", shortName="mmq", required=false, doc="Minimum mapping quality of reads to consider") public Integer MIN_MAPQ = 1;