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Add assert to testMissingAlleleSpecificAnnotationGroup (#1587)

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Ron Levine 2017-05-12 17:07:05 -04:00 committed by GitHub
parent 4a0458b2e9
commit 1d6756fbd0
1 changed files with 1 additions and 0 deletions
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protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/variantutils/GenotypeGVCFsIntegrationTest.java
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@ -612,6 +612,7 @@ public class GenotypeGVCFsIntegrationTest extends WalkerTest {
final WalkerTestSpec spec = new WalkerTestSpec(cmd, 1, Collections.singletonList("")); final WalkerTestSpec spec = new WalkerTestSpec(cmd, 1, Collections.singletonList(""));
spec.disableShadowBCF(); spec.disableShadowBCF();
executeTest("testMissingAlleleSpecificAnnotationGroup", spec); executeTest("testMissingAlleleSpecificAnnotationGroup", spec);
Assert.assertTrue(FileUtils.readFileToString(logFile).contains(ReferenceConfidenceVariantContextMerger.ADD_AS_STANDARD_MSG));
} }
@Test @Test