From 1d11e88899d37fcfae7020e959653569b821bc8d Mon Sep 17 00:00:00 2001 From: rpoplin Date: Thu, 5 May 2011 21:16:33 +0000 Subject: [PATCH] Adding another example call set to GATK resource bundle for use in VQSR wiki tutorial git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5774 348d0f76-0448-11de-a6fe-93d51630548a --- scala/qscript/core/GATKResourcesBundle.scala | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/scala/qscript/core/GATKResourcesBundle.scala b/scala/qscript/core/GATKResourcesBundle.scala index 7b372c495..e8b100ecb 100755 --- a/scala/qscript/core/GATKResourcesBundle.scala +++ b/scala/qscript/core/GATKResourcesBundle.scala @@ -125,6 +125,12 @@ class GATKResourcesBundle extends QScript { addResource(new Resource("/humgen/gsa-hpprojects/GATK/data/Comparisons/Unvalidated/AFR+EUR+ASN+1KG.dindel_august_release_merged_pilot1.20110126.sites.vcf", "1000G_indels_for_realignment", b37, true, false)) + // + // example call set for wiki tutorial + // + addResource(new Resource("/humgen/gsa-hpprojects/NA12878Collection/exampleCalls/NA12878.HiSeq.WGS.bwa.cleaned.raw.hg19.subset.vcf", + "NA12878.HiSeq.WGS.bwa.cleaned.raw.subset", b37, true, true)) + // // Test BAM file, specific to each reference //