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Fixed another test 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2399 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-12-18 05:05:03 +00:00
parent 94f5edb68a
commit 1cde4161b7
1 changed files with 5 additions and 5 deletions
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10
java/test/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationIntegrationTest.java
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@ -16,7 +16,7 @@ public class VariantFiltrationIntegrationTest extends WalkerTest {
public void testNoAction() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString() + " -B variant,VCF,/humgen/gsa-scr1/GATK_Data/Validation_Data/vcfexample2.vcf -L 1:10,020,000-10,021,000", 1,
Arrays.asList("49817e684effce7b6f3d5776dc781988"));
Arrays.asList("340e3a09d0571dc969557cc979a132b3"));
executeTest("test no action", spec);
}
@ -24,7 +24,7 @@ public class VariantFiltrationIntegrationTest extends WalkerTest {
public void testClusteredSnps() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString() + " -window 10 -B variant,VCF,/humgen/gsa-scr1/GATK_Data/Validation_Data/vcfexample2.vcf -L 1:10,020,000-10,021,000", 1,
Arrays.asList("7a1e834a372c3f3acfde82942be8c86c"));
Arrays.asList("53e2c4645bab58a4f039ff51d5bffb7e"));
executeTest("test clustered SNPs", spec);
}
@ -32,7 +32,7 @@ public class VariantFiltrationIntegrationTest extends WalkerTest {
public void testMask() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString() + " -mask foo -B mask,VCF,/humgen/gsa-scr1/GATK_Data/Validation_Data/vcfexample2.vcf -B variant,VCF,/humgen/gsa-scr1/GATK_Data/Validation_Data/vcfexample2.vcf -L 1:10,020,000-10,021,000", 1,
Arrays.asList("6b33aab1f199bd7856256dabdf729e1a"));
Arrays.asList("27dacba4bcc6beaac608a7b34b7206f0"));
executeTest("test mask", spec);
}
@ -40,7 +40,7 @@ public class VariantFiltrationIntegrationTest extends WalkerTest {
public void testFilter1() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString() + " -filter 'DoC < 20 || FisherStrand > 20.0' -filterName foo -B variant,VCF,/humgen/gsa-scr1/GATK_Data/Validation_Data/vcfexample2.vcf -L 1:10,020,000-10,021,000", 1,
Arrays.asList("7757178f6337e4c49097f62e8949f986"));
Arrays.asList("e1a17255db9aa17016457ce2d81c6fff"));
executeTest("test filter #1", spec);
}
@ -48,7 +48,7 @@ public class VariantFiltrationIntegrationTest extends WalkerTest {
public void testFilter2() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString() + " -filter 'AlleleBalance < 70.0 && FisherStrand == 1.4' -filterName bar -B variant,VCF,/humgen/gsa-scr1/GATK_Data/Validation_Data/vcfexample2.vcf -L 1:10,020,000-10,021,000", 1,
Arrays.asList("25354adffa90857be2900a0369cb2709"));
Arrays.asList("18ef67575a76c2be74af8bd8b9fdf86e"));
executeTest("test filter #2", spec);
}
}