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Removed outdated (and unused) -familyStr commandline argument

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Laurent Francioli 2011-11-30 14:45:04 +01:00
parent 9574be0394
commit 1cb5e9e149
1 changed files with 0 additions and 3 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotator.java
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@ -167,9 +167,6 @@ public class VariantAnnotator extends RodWalker<Integer, Integer> implements Ann
@Argument(fullName="vcfContainsOnlyIndels", shortName="dels",doc="Use if you are annotating an indel vcf, currently VERY experimental", required = false)
protected boolean indelsOnly = false;
@Argument(fullName="family_string",shortName="family",required=false,doc="A family string of the form mom+dad=child for use with the mendelian violation ratio annotation")
public String familyStr = null;
@Argument(fullName="MendelViolationGenotypeQualityThreshold",shortName="mvq",required=false,doc="The genotype quality treshold in order to annotate mendelian violation ratio")
public double minGenotypeQualityP = 0.0;