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Doing things too quickly is also naughty. Thanks, Andrey. Now, we're even. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4597 348d0f76-0448-11de-a6fe-93d51630548a
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ebanks 2010-10-29 14:50:04 +00:00
parent 58f7b4c595
commit 1b3fc8ddd2
1 changed files with 2 additions and 2 deletions
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4
java/src/org/broadinstitute/sting/gatk/refdata/features/refseq/RefSeqCodec.java
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@ -48,9 +48,9 @@ public class RefSeqCodec implements FeatureCodec {
String[] exon_stops = fields[10].split(",");
String[] eframes = fields[15].split(",");
if ( exon_starts.length == exon_stops.length )
if ( exon_starts.length != exon_stops.length )
throw new UserException.MalformedFile("Data format error: numbers of exon start and stop positions differ for line=" + line);
if ( exon_starts.length == eframes.length )
if ( exon_starts.length != eframes.length )
throw new UserException.MalformedFile("Data format error: numbers of exons and exon frameshifts differ for line=" + line);
ArrayList<GenomeLoc> exons = new ArrayList<GenomeLoc>(exon_starts.length);