zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Fixed logic: throw exception if contigs are NOT equal 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1827 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-10-14 02:48:44 +00:00
parent aeca14d052
commit 1b214c0de5
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java
View File

@ -203,7 +203,7 @@ public class VCFGenotypeWriterAdapter implements GenotypeWriter {
} }
this.referenceBase = refBase; this.referenceBase = refBase;
} else { } else {
if (contig.equals(this.contig)) if (!contig.equals(this.contig))
throw new IllegalArgumentException("The contig name has to be the same at a single locus"); throw new IllegalArgumentException("The contig name has to be the same at a single locus");
if (position != this.position) if (position != this.position)
throw new IllegalArgumentException("The position has to be the same at a single locus"); throw new IllegalArgumentException("The position has to be the same at a single locus");