Guarantees that the list of files will always be in the same order.

2011-07-17 11:41:34 -04:00 · 2011-07-17 11:41:34 -04:00 · 1af76736b9
parent dd92a14b40
commit 1af76736b9
1 changed files with 1 additions and 1 deletions
--- a/public/scala/src/org/broadinstitute/sting/queue/util/QScriptUtils.scala
+++ b/public/scala/src/org/broadinstitute/sting/queue/util/QScriptUtils.scala
@ -31,7 +31,7 @@ object QScriptUtils {
    for (bam <- fromFile(in).getLines)
      if (!bam.startsWith("#") && !bam.isEmpty )
        list :+= new File(bam.trim())
-    list
+    list.sortWith(_.compareTo(_) < 0)
  }

  /**