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Merge pull request #445 from broadinstitute/dr_rev_picard_for_2.8 

Rev picard, sam-jdk, tribble, and variant jars to 1.104.1628
This commit is contained in:
Eric Banks 2013-12-05 15:03:27 -08:00
parent 32cca883fc 0e65296efb
commit 1a0e140ab5
11 changed files with 9 additions and 9 deletions
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2
public/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltration.java
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@ -230,7 +230,7 @@ public class VariantFiltration extends RodWalker<Integer, Integer> {
filterExps = VariantContextUtils.initializeMatchExps(FILTER_NAMES, FILTER_EXPS);
genotypeFilterExps = VariantContextUtils.initializeMatchExps(GENOTYPE_FILTER_NAMES, GENOTYPE_FILTER_EXPS);
VariantContextUtils.engine.setSilent(true);
VariantContextUtils.engine.get().setSilent(true);
initializeVcfWriter();
}

3
settings/repository/net.sf/picard-1.102.1595.xml
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@ -1,3 +0,0 @@
<ivy-module version="1.0">
<info organisation="net.sf" module="picard" revision="1.102.1595" status="release" />
</ivy-module>

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settings/repository/net.sf/picard-1.102.1595.jar → settings/repository/net.sf/picard-1.104.1628.jar
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settings/repository/net.sf/picard-1.104.1628.xml 100644
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@ -0,0 +1,3 @@
<ivy-module version="1.0">
<info organisation="net.sf" module="picard" revision="1.104.1628" status="release" />
</ivy-module>

3
settings/repository/net.sf/sam-1.102.1595.xml
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@ -1,3 +0,0 @@
<ivy-module version="1.0">
<info organisation="net.sf" module="sam" revision="1.102.1595" status="release" />
</ivy-module>

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settings/repository/net.sf/sam-1.102.1595.jar → settings/repository/net.sf/sam-1.104.1628.jar
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settings/repository/net.sf/sam-1.104.1628.xml 100644
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@ -0,0 +1,3 @@
<ivy-module version="1.0">
<info organisation="net.sf" module="sam" revision="1.104.1628" status="release" />
</ivy-module>

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settings/repository/org.broad/tribble-1.102.1595.jar → settings/repository/org.broad/tribble-1.104.1628.jar
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settings/repository/org.broad/tribble-1.102.1595.xml → settings/repository/org.broad/tribble-1.104.1628.xml
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@ -1,3 +1,3 @@
<ivy-module version="1.0">
<info organisation="org.broad" module="tribble" revision="1.102.1595" status="integration" />
<info organisation="org.broad" module="tribble" revision="1.104.1628" status="integration" />
</ivy-module>

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settings/repository/org.broadinstitute/variant-1.102.1595.jar → settings/repository/org.broadinstitute/variant-1.104.1628.jar
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settings/repository/org.broadinstitute/variant-1.102.1595.xml → settings/repository/org.broadinstitute/variant-1.104.1628.xml
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@ -1,3 +1,3 @@
<ivy-module version="1.0">
<info organisation="org.broadinstitute" module="variant" revision="1.102.1595" status="integration" />
<info organisation="org.broadinstitute" module="variant" revision="1.104.1628" status="integration" />
</ivy-module>