diff --git a/python/AnnotateVCFwithMAF.py b/python/AnnotateVCFwithMAF.py index 3aed3a326..07378a0c9 100755 --- a/python/AnnotateVCFwithMAF.py +++ b/python/AnnotateVCFwithMAF.py @@ -77,6 +77,9 @@ def addFormat(infoString): last = val[len(val)-1] num = val.split(".")[1][1:len(val.split(".")[1])-1] newItems.append("proteinchange="+first+">"+last+";proteinoffset="+num) + if key == "type" : + newItems.append(item) + return ";".join(newItems) for vcf_line, locus_and_info in zip(vcf_file.readlines(), loci_and_info):