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made AR an Advanced argument to discourage basic users from fiddling with it

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Geraldine Van der Auwera 2013-08-14 14:46:17 -04:00
parent 928a9779db
commit 19a4bf9ff0
1 changed files with 1 additions and 0 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/ActiveRegionWalker.java
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@ -83,6 +83,7 @@ public abstract class ActiveRegionWalker<MapType, ReduceType> extends Walker<Map
@Output(fullName="activeRegionOut", shortName="ARO", doc="Output the active region to this IGV formatted file", required = false, defaultToStdout = false) @Output(fullName="activeRegionOut", shortName="ARO", doc="Output the active region to this IGV formatted file", required = false, defaultToStdout = false)
public PrintStream activeRegionOutStream = null; public PrintStream activeRegionOutStream = null;
@Advanced
@Input(fullName="activeRegionIn", shortName="AR", doc="Use this interval list file as the active regions to process", required = false) @Input(fullName="activeRegionIn", shortName="AR", doc="Use this interval list file as the active regions to process", required = false)
protected List<IntervalBinding<Feature>> activeRegionBindings = null; protected List<IntervalBinding<Feature>> activeRegionBindings = null;