made AR an Advanced argument to discourage basic users from fiddling with it
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@ -83,6 +83,7 @@ public abstract class ActiveRegionWalker<MapType, ReduceType> extends Walker<Map
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@Output(fullName="activeRegionOut", shortName="ARO", doc="Output the active region to this IGV formatted file", required = false, defaultToStdout = false)
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public PrintStream activeRegionOutStream = null;
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@Advanced
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@Input(fullName="activeRegionIn", shortName="AR", doc="Use this interval list file as the active regions to process", required = false)
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protected List<IntervalBinding<Feature>> activeRegionBindings = null;
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