Made num_loci_total public because I'm lazy. I'll change it back later.
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@ -20,7 +20,7 @@ public class AlleleMetrics {
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long dbsnp_hits=0;
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long num_variants=0;
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long num_loci_total=0;
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public long num_loci_total=0;
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long num_loci_confident=0;
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double LOD_cutoff = 5;
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long hapmap_genotype_correct = 0;
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